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    Gene editing of YIPF4 in hESCs V3

    Harper JW, sharan_swarup, Kelsey Hickey

    Published: 2023-10-02 DOI: 10.17504/protocols.io.rm7vzxy44gx1/v1
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    Abstract

    This protocol describes the creation of YIPF4 knockout hESCs.

    Steps

    Cell line maintenance

    1.

    Maintain H9 human embryonic stem cells (AAVS1-TRE3G-NGN2 hESCs) in complete (E8 media).

    Targeted knock-out of YIPF4

    2.

    For YIPF4 knock-out, the following sgRNA sequences was designed and ordered from Synthego (5’ AAGAGGTTATGGCTGGCTTC 3').

    3.

    0.6 μg sgRNA was incubated with 3 μg SpCas9 protein for 10 mins at room temperature and electroporated into 2 × 105 H9 cells using Neon transfection system (Thermo Fisher Scientific).

    4.

    Deletions were verified by DNA sequencing with Illumina MiSeq (F: GTTCAATAGCATCCCCAGATGT and R: TCATCCCACAGACTAGCTCAAA) and by immunoblotting with a YIPF4 antibody (Sino Biological 202844-T46).

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